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There's two ways to pay an employee a bonus or commission:

  • include the payment on the employee's regular pay, or
  • process the payment in a separate pay.

To add a bonus or commission payment to an employee's pay, set up a new pay item as described below.

Superannuation and KiwiSaver contributions

Some bonus and commission payments need to be included in your superannuation (Australia) or KiwiSaver (New Zealand) calculations. To clarify the superannuation/KiwiSaver obligations for your bonus or commission payment, speak to your accounting advisor or check the ATO guidelines (Australia) or IRD guidelines (New Zealand).


1. Set up a bonus or commission pay item

Set up a bonus or commission pay item

You can create one pay item for a bonus or commission payment, then assign it to the applicable employees. If the amount of the payment varies between employees, just change the amount when you do a pay run. Or you can can create separate pay items for each employee - it's up to you.

  1. Go to the Payroll menu and choose Pay items.
  2. Click Create earning.
  3. Set up the earning:
    1. For the Type, select Bonus or Commission.
    2. (Optional) Change the Name for the earning.
    3. If you'd like a different, more personalised, name to show on payslips for this earning, enter a Name for payslip, such as "Annual Bonus - Steven". Otherwise, this can be the same as the Name field.

    4. Enter the Amount for the bonus or commission. If needed, you can change this amount during the pay run.
    5. Choose whether the bonus or commission is Taxable or Non-Taxable. If unsure, check with your accounting advisor or the ATO/IRD.
    6. Choose how to handle superannuation/KiwiSaver contributions:

      • Australian businesses: if the payment should be included in super calculations, select the Pay super on this earning option.
      • New Zealand businesses: if the payment should be excluded from compulsory employer contributions, select the Exclude CEC option. To exclude the pay item from gross earnings, select the option Exclude from gross earnings for leave calculations. To prevent employees accruing pro-rata annual leave on this pay item, select the option Don't accrue annual leave on this pay item.
    7. (Australia only, if reporting through Single Touch Payroll) Select the applicable ATO reporting category. If unsure, check with your accounting advisor or the ATO. Learn more about Assign ATO reporting categories for Single Touch Payroll.

    Here's our example setup for a $750 bonus payment:

  4. Click Save.
  5. Assign the pay item to the employee as described in the next task.
2. Assign the pay item to an employee

Assign the pay item to an employee

  1. From the Payroll menu, choose Employees.
  2. Click the employee's name.
  3. Click the Pay items - earnings & deductions tab.
  4. In the Earnings section, click the dropdown arrow next to the Add earning... field.
  5. Choose the bonus or commission pay item you created above. The pay item is assigned to the employee.


  6. Click Save.
3. Pay the bonus or commission

Pay the bonus or commission 

  1. Go to the Payroll menu and choose Enter Pay.
  2. Select the employee to be paid then click Start Pay Run.
  3. Enter or confirm the bonus or commission amount being paid.
  4. If this is a bonus or commission-only pay, remove all other Hours and Amounts from the pay.
  5. Click into the PAYG or PAYE field and enter the tax for this payment. See above for calculation information. Here's our example of a bonus-only pay:
    bonus and payg fields highlighted in the pay run
  6. Continue processing the pay as normal.